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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galEgalE: UDP-glucose 4-epimerase GalE; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (340 aa)    
Predicted Functional Partners:
galU
galU: UTP-glucose-1-phosphate uridylyltransferase.
 
  
 0.944
galU-3
galU: UTP-glucose-1-phosphate uridylyltransferase.
 
  
 0.944
galU-2
galU: UTP-glucose-1-phosphate uridylyltransferase.
 
  
 0.943
tuaD_1
NDP-sugDHase: nucleotide sugar dehydrogenase family protein.
  
 
 0.932
tuaD_2
NDP-sugDHase: nucleotide sugar dehydrogenase family protein.
  
 
 0.932
wecA
Glycosyl transferase 4 family protein.
  
  
 0.805
DM82_2331
Glycosyl transferases group 1 family protein.
     
 0.785
DM82_2329
Polysaccharide biosynthesis family protein.
     
 0.668
DM82_2330
Glycosyl transferase 2 family protein.
     
 0.613
algC
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein.
  
 
 0.600
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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