Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rfbBdTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (353 aa)    
Predicted Functional Partners:
rfbD
rmlD: dTDP-4-dehydrorhamnose reductase.
 
 
 0.999
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
 0.999
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
 
 0.999
DM82_2341
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
 
0.973
tuaD_1
NDP-sugDHase: nucleotide sugar dehydrogenase family protein.
  
  
 0.873
tuaD_2
NDP-sugDHase: nucleotide sugar dehydrogenase family protein.
  
  
 0.873
DM82_5934
Polysaccharide biosynthesis family protein.
  
  
 0.845
DM82_2329
Polysaccharide biosynthesis family protein.
  
  
 0.839
rfbX
Polysaccharide biosynthesis family protein.
  
  
 0.839
DM82_2446
Polysaccharide biosynthesis family protein.
  
  
 0.834
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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