Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcaK_1Sugar (and other) transporter family protein. (450 aa)    
Predicted Functional Partners:
DM82_2408
Hypothetical protein.
       0.773
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
       0.762
fahA
Fum_ac_acetase: fumarylacetoacetase.
       0.759
mhpA_2
FAD binding domain protein.
       0.660
blaB1
Metallo-beta-lactamase superfamily protein.
       0.620
benB
benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit.
 
     0.514
benA
benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit.
 
     0.510
benC
Benzoate 1,2-dioxygenase electron transfer component.
 
   
 0.489
lvr_3
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.485
catC
Muco_delta: muconolactone delta-isomerase.
 
   
 0.441
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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