Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
DM82_2408Hypothetical protein. (76 aa)    
Predicted Functional Partners:
mhpA_2
FAD binding domain protein.
 
    0.932
blaB1
Metallo-beta-lactamase superfamily protein.
 
     0.931
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
     0.860
mhpA_1
FAD binding domain protein.
 
    0.810
fahA
Fum_ac_acetase: fumarylacetoacetase.
 
     0.802
pcaK_1
Sugar (and other) transporter family protein.
       0.773
DM82_3138
Periplasmic binding family protein.
  
     0.568
yiaJ
Bacterial transcriptional regulator family protein.
 
     0.557
paaN
paaN_2: phenylacetic acid degradation protein paaN.
  
     0.552
DM82_3137
Receptor ligand binding region family protein.
  
     0.538
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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