Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
iclR_3Bacterial transcriptional regulator family protein. (263 aa)    
Predicted Functional Partners:
kdgR_4
Bacterial transcriptional regulator family protein.
  
     0.728
kdgR_3
Bacterial transcriptional regulator family protein.
  
     0.715
kdgR_5
Bacterial transcriptional regulator family protein.
  
     0.714
yiaJ
Bacterial transcriptional regulator family protein.
  
     0.689
kdgR_1
Bacterial transcriptional regulator family protein.
  
     0.653
DM82_2415
glutaryl-CoA dehydrogenase.
       0.567
kipI_1
Allophanate hydrolase subunit 1 family protein.
  
    0.473
kipI_2
Allophanate hydrolase subunit 1 family protein.
  
    0.473
DM82_3453
Hypothetical protein.
  
    0.465
DM82_4196
Hypothetical protein.
  
    0.465
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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