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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_2415glutaryl-CoA dehydrogenase. (395 aa)    
Predicted Functional Partners:
fadJ_1
enoyl-CoA hydratase/isomerase family protein.
 
 0.984
echA8_3
enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  0.964
echA15
enoyl-CoA hydratase EchA15; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.938
caiD_4
enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.937
paaJ-2
acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.934
DM82_2719
acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein.
  
  0.933
pcaF
pcaF: 3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.933
DM82_6347
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
  
 
0.925
aidB_1
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein.
  
  
 
0.918
lpdA-2
lipoamide_DH: dihydrolipoyl dehydrogenase.
  
 0.917
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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