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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_2417Hypothetical protein. (100 aa)    
Predicted Functional Partners:
DM82_2418
Hypothetical protein.
 
  
 0.983
dps2
Ferritin-like domain protein; Belongs to the Dps family.
  
    0.855
ygaU
BON domain protein.
   
  
 0.852
DM82_1226
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.845
DM82_6122
Hypothetical protein.
  
  
 0.697
DM82_1228
spoVR like family protein.
   
    0.694
pcp_3
Glycine zipper 2TM domain protein.
  
    0.668
osmY_2
BON domain protein.
 
    0.620
yqiC
Membrane fusogenic activity family protein.
 
     0.576
DM82_1661
Hypothetical protein.
  
    0.568
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.