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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_2463Capsule polysaccharide biosynthesis family protein. (401 aa)    
Predicted Functional Partners:
gno
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.961
DM82_2461
Sulfatase family protein.
 
   
 0.949
eryA_1
Zinc-binding dehydrogenase family protein.
 
     0.915
DM82_2476
Capsule polysaccharide biosynthesis family protein.
   
 0.901
DM82_2464
Chain length determinant family protein.
 
 
 
 0.858
kpsM
ABC-2 type transporter family protein.
 
   
 0.808
kbl_1
cys/Met metabolism PLP-dependent enzyme family protein.
 
   
 0.802
lpxC_1
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
       0.781
kpsT
ABC transporter family protein.
 
   
 0.766
DM82_2474
Polysaccharide biosynthesis/export family protein.
 
   
 0.748
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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