Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kpsMABC-2 type transporter family protein. (264 aa)    
Predicted Functional Partners:
kpsT
ABC transporter family protein.
 0.999
DM82_2464
Chain length determinant family protein.
 
 
 0.998
DM82_2343
ABC transporter family protein.
  
 
 0.969
DM82_2476
Capsule polysaccharide biosynthesis family protein.
 
  
 0.964
DM82_2474
Polysaccharide biosynthesis/export family protein.
 
  
 0.890
DM82_2467
Glycosyl transferases group 1 family protein.
 
  
 0.856
DM82_2463
Capsule polysaccharide biosynthesis family protein.
 
   
 0.804
DM82_4497
Chain length determinant family protein.
  
  
 0.799
DM82_2461
Sulfatase family protein.
 
  
 0.792
DM82_2445
Capsule polysaccharide biosynthesis family protein.
 
   
 0.769
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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