Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_2474Polysaccharide biosynthesis/export family protein. (397 aa)    
Predicted Functional Partners:
DM82_2476
Capsule polysaccharide biosynthesis family protein.
 
  
 0.967
DM82_2464
Chain length determinant family protein.
 
  
 0.960
etk
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
 
 0.949
wzc
Eps_fam: capsular exopolysaccharide family domain protein.
 
 
 0.945
DM82_2447
Eps_transp_fam: exopolysaccharide transport family protein.
 
 
 0.944
kpsM
ABC-2 type transporter family protein.
 
  
 0.890
kpsT
ABC transporter family protein.
 
  
 0.884
wcaJ_2
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.865
wcaJ_3
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.865
DM82_2475
Glycosyl transferases group 1 family protein.
 
  
 0.856
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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