Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lasR_1Bacterial regulatory s, luxR family protein. (243 aa)    
Predicted Functional Partners:
evgS
Response regulator.
   
 
 0.850
lasI_2
Autoinducer synthetase family protein.
 
  
 0.782
lasI_1
Autoinducer synthetase family protein.
 
  
 0.758
zraS_3
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
 
 0.639
DM82_2522
phytanoyl-CoA dioxygenase family protein.
       0.631
phnW_1
2-aminoethylphosphonate aminotransferase family protein; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
       0.631
degS_2
Response regulator.
 
 
 0.507
DM82_2525
eamA-like transporter family protein.
       0.497
hprA
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
  
    0.480
patA
Aminotransferase class I and II family protein.
       0.479
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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