Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hprAD-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein. (326 aa)    
Predicted Functional Partners:
DM82_2525
eamA-like transporter family protein.
  
    0.749
patA
Aminotransferase class I and II family protein.
 
   
 0.506
lasR_1
Bacterial regulatory s, luxR family protein.
  
    0.480
copA_1
ATPase-IB1_Cu: copper-translocating P-type ATPase.
 
 
 0.477
phnW_1
2-aminoethylphosphonate aminotransferase family protein; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
  
  
 0.463
DM82_2522
phytanoyl-CoA dioxygenase family protein.
       0.408
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
     0.401
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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