Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dps2Ferritin-like domain protein; Belongs to the Dps family. (162 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adaptor ClpS family protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.878
DM82_2417
Hypothetical protein.
  
  
 0.858
raiA
yfiA: ribosomal subunit interface protein.
 
  
 0.822
DM82_1226
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.781
stp
Stp: serine transporter family protein.
    
   0.769
wrbA_2
Flavodoxin family protein.
  
  
 0.745
wrbA
NAD(P)H:quinone oxidoreductase, type IV; flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV; Belongs to the WrbA family.
  
  
 0.745
ahpF
ahpF: alkyl hydroperoxide reductase subunit F.
 
  
 0.700
DM82_5547
Hypothetical protein.
  
  
 0.673
ohrB
Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein.
  
  
 0.673
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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