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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dps2Ferritin-like domain protein; Belongs to the Dps family. (162 aa)    
Predicted Functional Partners:
raiA
yfiA: ribosomal subunit interface protein.
 
  
 0.871
DM82_2417
Hypothetical protein.
  
    0.855
clpS
ATP-dependent Clp protease adaptor ClpS family protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.855
DM82_1226
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.724
ahpC
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
 
  
 0.698
copA_1
ATPase-IB1_Cu: copper-translocating P-type ATPase.
  
  
 0.668
ahpF
ahpF: alkyl hydroperoxide reductase subunit F.
 
  
 0.664
ahpC_1
Redoxin family protein.
  
  
 0.648
tsaA
Hypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein.
  
  
 0.646
katE
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.643
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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