STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltKHEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein. (225 aa)    
Predicted Functional Partners:
artM_2
ABC transporter family protein.
 
 0.995
yecS_6
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 
 
 
0.983
gltI_1
Bacterial extracellular solute-binding s, 3 family protein.
 
 0.983
glnH_2
Bacterial extracellular solute-binding s, 3 family protein.
 
 0.969
artM_1
ABC transporter family protein.
 
 
 0.904
artM_4
Amino acid ABC transporter.
 
 
 0.892
artP
Amino acid ABC transporter.
 
 
 0.890
glnQ_2
ABC transporter family protein.
 
 
 0.887
fliY_3
Bacterial extracellular solute-binding s, 3 family protein.
 
 0.859
fliY_1
Bacterial extracellular solute-binding s, 3 family protein.
 
 0.854
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.