Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
alc-2Allantoicase: allantoicase; Belongs to the allantoicase family. (336 aa)    
Predicted Functional Partners:
allA_2
Ureidoglycolate hydrolase family protein; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
 
 0.995
allA_1
Ureidoglycolate hydrolase family protein; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
 
 0.988
DM82_1670
Polysaccharide deacetylase family protein.
 
 
  0.941
ureA
Urease_gam: urease, gamma subunit; Belongs to the urease gamma subunit family.
    
  0.910
ureB
Urease_beta: urease, beta subunit; Belongs to the urease beta subunit family.
    
  0.910
ureC
Urease_alph: urease, alpha subunit.
    
  0.909
alc
Allantoicase: allantoicase; Belongs to the allantoicase family.
  
  
 
0.901
DM82_4178
Ureidoglycolate lyase.
     
  0.900
uraD
UHCUDC: OHCU decarboxylase.
 
  
 0.624
uraH
Hdxy_isourate: hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.620
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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