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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gph-2Phosphoglycolate phosphatase, bacterial; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. (237 aa)    
Predicted Functional Partners:
ppaX
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein.
  
  
  0.963
ghrA_2
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
 
  
 0.919
DM82_5511
Haloacid dehalogenase-like hydrolase family protein.
  
  
  0.917
ghrB
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
  0.915
ghrB_2
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
 
  
  0.915
ghrA_1
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
    
 0.908
DM82_2515
FAD binding domain protein.
    
 0.903
DM82_2516
FAD binding domain protein.
    
 0.903
glcD
glcD: glycolate oxidase, subunit GlcD.
    
 0.903
DM82_4409
FAD binding domain protein.
    
 0.903
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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