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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiDCatalytic LigB subunit of aromatic ring-opening dioxygenase family protein. (262 aa)    
Predicted Functional Partners:
yhhW_4
Pirin family protein; Belongs to the pirin family.
 
  
 0.707
yhhW_2
Pirin family protein; Belongs to the pirin family.
 
  
 0.644
yhhW_3
Cupin domain protein; Belongs to the pirin family.
 
  
 0.619
yhhW_5
Cupin domain protein; Belongs to the pirin family.
 
  
 0.613
yhhW_1
Pirin family protein; Belongs to the pirin family.
 
  
 0.610
hpcD
5-carboxymethyl-2-hydroxymuconate isomerase family protein.
  
  
 0.489
grxD
Monothiol glutaredoxin, Grx4 family; Belongs to the glutaredoxin family. Monothiol subfamily.
       0.478
bsdB
Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.466
hpaH
hpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
  
  
 0.446
mhpD_2
Fumarylacetoacetate (FAA) hydrolase family protein.
  
  
 0.446
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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