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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arfAompA family protein. (308 aa)    
Predicted Functional Partners:
DM82_2777
Hypothetical protein.
 
  
 0.954
DM82_2776
Intracellular multiplication and macrophage-killing family protein.
 
   
 0.938
cwlK
D-alanyl-D-alanine carboxypeptidase family protein.
 
   
 0.859
DM82_2788
Type VI secretion lipofamily protein.
  
   
 0.739
DM82_2790
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
   
 0.704
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.696
hcp1_1
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
  
  
 0.680
DM82_2783
25-like lysozyme family protein.
  
     0.679
DM82_1838
vgr_GE: Rhs element Vgr family protein.
 
     0.634
DM82_2797
vgr_GE: Rhs element Vgr family protein.
 
     0.634
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.