potF_2 protein (Burkholderia oklahomensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

potF_2

Bacterial extracellular solute-binding family protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (343 aa)

Predicted Functional Partners:

ydcV_3

0.997

potH_3

0.996

ydcV_1

0.942

ydcV_5

0.939

potH_1

0.930

potH_5

0.925

ydcV_4

0.924

potA_9

0.885

phnV

0.880

potA_1

0.879

Your Current Organism:

Burkholderia oklahomensis

NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
phnV	potA_1	DM82_4422	DM82_1431	phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.830
phnV	potA_9	DM82_4422	DM82_4566	phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.835
phnV	potF_2	DM82_4422	DM82_2798	phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.	Bacterial extracellular solute-binding family protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.880
phnV	potH_1	DM82_4422	DM82_1430	phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.	Binding--dependent transport system inner membrane component family protein.	0.907
phnV	potH_3	DM82_4422	DM82_2800	phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.	Binding--dependent transport system inner membrane component family protein.	0.914
phnV	potH_5	DM82_4422	DM82_5983	phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.	Binding--dependent transport system inner membrane component family protein.	0.850
phnV	ydcV_1	DM82_4422	DM82_1429	phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.	Binding--dependent transport system inner membrane component family protein.	0.744
phnV	ydcV_5	DM82_4422	DM82_4564	phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.	Binding--dependent transport system inner membrane component family protein.	0.744
potA_1	phnV	DM82_1431	DM82_4422	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.	0.830
potA_1	potA_9	DM82_1431	DM82_4566	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.973
potA_1	potF_2	DM82_1431	DM82_2798	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Bacterial extracellular solute-binding family protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.879
potA_1	potH_1	DM82_1431	DM82_1430	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Binding--dependent transport system inner membrane component family protein.	0.996
potA_1	potH_3	DM82_1431	DM82_2800	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Binding--dependent transport system inner membrane component family protein.	0.908
potA_1	potH_5	DM82_1431	DM82_5983	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Binding--dependent transport system inner membrane component family protein.	0.875
potA_1	ydcV_1	DM82_1431	DM82_1429	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Binding--dependent transport system inner membrane component family protein.	0.995
potA_1	ydcV_3	DM82_1431	DM82_2799	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Binding--dependent transport system inner membrane component family protein.	0.891
potA_1	ydcV_4	DM82_1431	DM82_5982	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Binding--dependent transport system inner membrane component family protein.	0.857
potA_1	ydcV_5	DM82_1431	DM82_4564	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Binding--dependent transport system inner membrane component family protein.	0.979
potA_9	phnV	DM82_4566	DM82_4422	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.	0.835
potA_9	potA_1	DM82_4566	DM82_1431	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.973

page 1 of 5

Server load: medium (46%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About