Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yddAABC transporter family protein. (588 aa)    
Predicted Functional Partners:
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
   0.640
hflB-2
ftsH_fam: ATP-dependent metallopeptidase HflB family protein; Belongs to the AAA ATPase family.
    
 0.624
naiP_2
Sugar (and other) transporter family protein.
 
     0.509
DM82_6355
AMP-binding enzyme family protein.
   
 
 0.485
alc
Allantoicase: allantoicase; Belongs to the allantoicase family.
   
 
 0.438
alc-2
Allantoicase: allantoicase; Belongs to the allantoicase family.
   
 
 0.438
DM82_1770
Acyl CoA binding family protein.
    
 0.417
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
      
 0.417
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
      
 0.417
DM82_2080
Putative membrane protein.
  
     0.409
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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