Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
agcSagcS: amino acid carrier family protein. (504 aa)    
Predicted Functional Partners:
DM82_2857
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.809
betP
Bcct: transporter, betaine/carnitine/choline transporter family protein; Belongs to the BCCT transporter (TC 2.A.15) family.
 
   
 0.468
clcA_2
CBS domain protein.
  
    0.465
clcB
CBS domain protein.
  
    0.463
clcA_1
Voltage gated chloride channel family protein.
  
    0.463
clcA_3
Voltage gated chloride channel family protein.
  
    0.463
gltD
Glutamate synthase, NADH/NADPH, small subunit domain protein.
       0.424
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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