Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccsB-2resB-like family protein. (726 aa)    
Predicted Functional Partners:
ccsB
cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB.
 
  
 0.996
resA
ahpC/TSA family protein.
 
  
 0.782
DM82_639
Hypothetical protein.
  
     0.774
DM82_259
Hypothetical protein.
  
     0.603
DM82_62
Hypothetical protein; FAD linked oxidase, C-terminal domain protein.
  
     0.591
DM82_5963
Flavinator of succinate dehydrogenase family protein.
  
     0.576
cycA
Cytochrome c family protein.
     
 0.566
DM82_405
Hypothetical protein.
  
     0.562
yedY_1
Oxidoreductase molybdopterin binding domain protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being a [...]
       0.545
DM82_1882
Hypothetical protein.
  
     0.542
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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