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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_2945Phenylacetic acid degradation B. (94 aa)    
Predicted Functional Partners:
paaA
Phenylacetic acid catabolic family protein.
 
 0.999
paaC
Phenylacetic acid catabolic family protein.
 
 0.999
paaJ
PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit.
 
 
 0.998
hmp_2
2Fe-2S iron-sulfur cluster binding domain protein.
 
 
 0.998
paaD
paaD: phenylacetic acid degradation protein PaaD.
 
 
 0.988
paaF
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.979
paaB
paaB1: phenylacetate degradation putative enoyl-CoA hydratase PaaB.
 
 
 0.970
hmp_3
2Fe-2S iron-sulfur cluster binding domain protein.
 
 
 0.875
ophA1_1
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.842
thcB
Cytochrome domain protein; P450 116; Belongs to the cytochrome P450 family.
  
 
 0.842
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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