close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmp_22Fe-2S iron-sulfur cluster binding domain protein. (362 aa)    
Predicted Functional Partners:
DM82_2945
Phenylacetic acid degradation B.
 
 
 0.998
paaC
Phenylacetic acid catabolic family protein.
 
 0.998
paaA
Phenylacetic acid catabolic family protein.
 
 0.997
paaJ
PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit.
 
 
 0.997
paaD
paaD: phenylacetic acid degradation protein PaaD.
 
 
  0.982
paaF
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.972
paaB
paaB1: phenylacetate degradation putative enoyl-CoA hydratase PaaB.
 
 
 0.951
ppsE_2
AMP-binding enzyme family protein.
  
 0.878
pksM
Thioester-redct: thioester reductase domain protein.
   
 0.857
kstR2
Bacterial regulatory s, tetR family protein.
 
  
 0.848
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.