Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ompW_4ompW family protein. (276 aa)    
Predicted Functional Partners:
DM82_2962
Hypothetical protein.
       0.767
DM82_1043
Putative transmembrane protein.
  
     0.744
DM82_1042
Putative transmembrane protein.
  
     0.734
DM82_6268
Putative transmembrane protein.
  
     0.734
DM82_2305
Hypothetical protein.
  
     0.700
flhD_1
Flagellar transcriptional activator family protein; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways.
  
     0.695
DM82_3128
ATP synthase I chain family protein.
  
     0.694
DM82_2009
smpA / OmlA family protein.
  
   
 0.670
DM82_3644
Hypothetical protein.
  
     0.666
DM82_1393
AAA domain protein.
  
     0.662
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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