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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fliA_1RNA polymerase sigma factor, FliA/WhiG family protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (243 aa)    
Predicted Functional Partners:
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
 0.993
flgM-2
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
 0.989
fliM
fliM_switch: flagellar motor switch protein FliM.
 
 
 0.965
flgC
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
 
 0.963
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.960
flgK
flgK_ends: flagellar hook-associated protein FlgK.
 
  
 0.960
flgC-2
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
 
 0.958
flgB-2
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.955
flgF
flgF: flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
 
  
 0.948
flgE_1
flgEFG_subfam: flagellar hook-basal body family protein.
 
  
 0.940
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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