STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheYChemotaxis protein CheY. (131 aa)    
Predicted Functional Partners:
cheZ
Protein phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
 
 0.999
cheA
Chemotaxis protein CheA.
 
 0.982
cheW_2
cheW-like domain protein.
 
 
 0.952
cheY_2
Response regulator.
 
  
 
0.950
fliN
fliN: flagellar motor switch protein FliN.
  
 0.935
zraS_3
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 
 0.930
trg_1
Hypothetical protein.
 
 0.919
fliN-2
fliN: flagellar motor switch protein FliN.
   
 0.915
DM82_4966
Surface presentation of antigens family protein.
   
  0.906
cheW_1
cheW-like domain protein.
 
 
 0.903
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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