STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3039PAAR motif family protein. (177 aa)    
Predicted Functional Partners:
DM82_1838
vgr_GE: Rhs element Vgr family protein.
 
   
 0.789
DM82_2797
vgr_GE: Rhs element Vgr family protein.
 
   
 0.789
DM82_2788
Type VI secretion lipofamily protein.
 
  
 0.788
DM82_3040
VRR-NUC domain protein.
  
  
 0.786
DM82_3041
Hypothetical protein.
  
    0.781
cwlK
D-alanyl-D-alanine carboxypeptidase family protein.
 
   
 0.778
DM82_2777
Hypothetical protein.
 
    0.772
DM82_2790
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
  
 0.769
DM82_2776
Intracellular multiplication and macrophage-killing family protein.
 
   
 0.764
hcp1_1
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
   
 0.763
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.