STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3045Phage head completion family protein. (121 aa)    
Predicted Functional Partners:
DM82_3047
Phage Tail Protein X family protein.
 
    0.989
DM82_3044
portal_PBSX: phage portal protein, PBSX family.
 
    0.979
DM82_3052
P2 phage tail completion R family protein.
 
    0.976
DM82_3053
tail_comp_S: phage virion morphogenesis protein.
 
    0.976
DM82_3356
major_capsid_P2: phage major capsid protein, P2 family.
 
  
 0.970
DM82_3355
Phage small terminase subunit.
 
    0.968
DM82_3357
Phage capsid scaffolding (GPO) serine peptidase family protein.
 
    0.967
DM82_3358
ATPase subunit of terminase family protein.
 
    0.967
DM82_3334
Mu-like prophage FluMu gp41 family protein.
 
    0.966
DM82_3331
Phage P2 GpU family protein.
 
    0.964
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.