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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3048Putative membrane protein. (114 aa)    
Predicted Functional Partners:
DM82_3049
Hypothetical protein.
  
    0.866
DM82_3051
phage_LysB: phage lysis regulatory, LysB family protein.
       0.788
DM82_3050
Putative peptidoglycan binding domain protein.
       0.786
DM82_3047
Phage Tail Protein X family protein.
  
    0.766
DM82_3045
Phage head completion family protein.
       0.761
DM82_3046
Putative gp37.
       0.737
DM82_3044
portal_PBSX: phage portal protein, PBSX family.
       0.565
DM82_3052
P2 phage tail completion R family protein.
       0.564
DM82_3053
tail_comp_S: phage virion morphogenesis protein.
       0.564
DM82_1151
Bacteriophage lambda tail assembly I family protein.
   
    0.440
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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