STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xpsD_2Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family. (454 aa)    
Predicted Functional Partners:
gspG
typeII_sec_gspG: type II secretion system protein G.
 
  
 0.817
zot
ATPase associated with various cellular activities family protein.
 
   
 0.806
DM82_3073
Hypothetical protein.
       0.773
DM82_3074
Neisseria meningitidis TspB family protein.
       0.773
gspF
gspF: type II secretion system protein F.
 
  
 0.763
gspE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.729
gspF-2
Type II secretion system (T2SS), F family protein.
 
  
 0.697
eprH
prgH: type III secretion apparatus protein PrgH/EprH.
   
 
 0.687
epsE_3
Type II/IV secretion system family protein.
 
  
 0.686
epsE_1
Type II/IV secretion system family protein.
 
  
 0.677
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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