Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
zotATPase associated with various cellular activities family protein. (305 aa)    
Predicted Functional Partners:
DM82_3074
Neisseria meningitidis TspB family protein.
 
     0.897
xpsD_2
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
 
   
 0.806
DM82_3073
Hypothetical protein.
       0.773
DM82_3075
Hypothetical protein.
       0.568
DM82_3070
Hypothetical protein.
       0.529
DM82_3076
Putative membrane protein.
       0.438
DM82_3358
ATPase subunit of terminase family protein.
  
     0.425
DM82_3052
P2 phage tail completion R family protein.
  
     0.419
DM82_3347
P2 phage tail completion R family protein.
  
     0.419
DM82_3044
portal_PBSX: phage portal protein, PBSX family.
  
     0.418
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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