Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_3106FAD binding domain protein. (472 aa)    
Predicted Functional Partners:
coxB
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.510
mdlB_3
FMN-dependent dehydrogenase family protein.
 
 0.505
yvdP
Berberine and berberine like family protein.
  
     0.488
mdlB
(S)-mandelate dehydrogenase.
 
 0.480
lldD
Hypothetical protein; Conserved region in glutamate synthase family protein.
 
 0.475
argT_2
Bacterial extracellular solute-binding s, 3 family protein.
       0.460
etfB
Electron transfer flavodomain protein.
 
 
 0.451
DM82_897
Electron transfer flavodomain protein.
 
 
 0.436
etfA_2
Electron transfer flavoFAD-binding domain protein.
 
 
 0.430
mdlB_2
Dihydroorotate dehydrogenase family protein.
 
 0.411
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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