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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soj_1cobQ/CobB/MinD/ParA nucleotide binding domain protein. (256 aa)    
Predicted Functional Partners:
parB
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
 
 
 0.972
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
 
 0.802
DM82_3235
parB_part: ParB/RepB/Spo0J family partition domain protein.
 
 
 0.780
gidB
16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.774
noc
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
 
 
 0.700
ftsK_2
ftsK/SpoIIIE family protein; Belongs to the FtsK/SpoIIIE/SftA family.
  
  
 0.686
ybiR
Citrate transporter family protein.
       0.678
ftsK_1
ftsK/SpoIIIE family protein.
  
  
 0.674
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.615
DM82_1120
Putative gp58.
  
 
 0.579
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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