Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM82_3157Bacterial regulatory, arsR family protein. (189 aa)    
Predicted Functional Partners:
DM82_176
O-Antigen ligase family protein.
  
     0.735
DM82_183
snoaL-like domain protein.
 
     0.669
DM82_1657
Tetratricopeptide repeat family protein.
  
     0.658
DM82_3156
Peptidase C26 family protein.
       0.657
DM82_4800
Gram-negative porin family protein.
  
     0.657
DM82_3128
ATP synthase I chain family protein.
  
     0.653
DM82_1212
Hypothetical protein.
  
     0.651
DM82_2305
Hypothetical protein.
  
     0.615
DM82_2199
Gram-negative porin family protein.
  
     0.613
DM82_653
Toxin-antitoxin system toxin component, PIN family.
  
     0.609
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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