Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_3167Type IV pilus biogenesis family protein. (136 aa)    
Predicted Functional Partners:
gspG
typeII_sec_gspG: type II secretion system protein G.
  
  
 0.711
gspI
gspI: type II secretion system protein I.
  
  
 0.656
gspD
type_II_gspD: type II secretion system protein D.
  
 
 0.654
invG_1
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
 
 0.654
invG_2
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
 
 0.654
invG_3
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
 
 0.654
invG_5
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
 
 0.654
gspH
typeII_sec_gspH: type II secretion system protein H.
  
  
 0.645
pulD_1
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
  
 
 0.644
xpsD_2
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
  
 
 0.644
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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