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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspHtypeII_sec_gspH: type II secretion system protein H. (204 aa)    
Predicted Functional Partners:
DM82_3172
Type II secretion system (T2SS), K family protein.
 
 
 0.978
gspI
gspI: type II secretion system protein I.
 
  
 0.970
gspG
typeII_sec_gspG: type II secretion system protein G.
 
  
 0.946
gspL
typeII_sec_gspL: type II secretion system protein L.
 
  
 0.915
epsM
Type II secretion system (T2SS), M family protein.
 
  
 0.907
DM82_3171
Putative general secretion pathway protein J.
  
 
 0.903
DM82_3175
Type II secretion system (T2SS), N family protein.
 
   
 0.890
gspF
gspF: type II secretion system protein F.
 
  
 0.765
gspE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.744
gspD
type_II_gspD: type II secretion system protein D.
 
  
 0.730
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.