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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3172Type II secretion system (T2SS), K family protein. (402 aa)    
Predicted Functional Partners:
gspI
gspI: type II secretion system protein I.
 
 
 0.994
DM82_3171
Putative general secretion pathway protein J.
  
 
 0.991
gspH
typeII_sec_gspH: type II secretion system protein H.
 
 
 0.978
gspG
typeII_sec_gspG: type II secretion system protein G.
 
 
 0.971
gspL
typeII_sec_gspL: type II secretion system protein L.
 
  
 0.947
epsM
Type II secretion system (T2SS), M family protein.
 
  
 0.945
DM82_3175
Type II secretion system (T2SS), N family protein.
 
   
 0.931
gspD
type_II_gspD: type II secretion system protein D.
 
   
 0.810
DM82_2422
Putative prepilin-type cleavage/methylation-like protein.
 
 
 0.801
DM82_5723
Hypothetical protein; Bacterial shufflon, N-terminal constant region family protein.
  
 
 0.764
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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