Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gspLtypeII_sec_gspL: type II secretion system protein L. (476 aa)    
Predicted Functional Partners:
epsM
Type II secretion system (T2SS), M family protein.
 
 
 0.987
DM82_3172
Type II secretion system (T2SS), K family protein.
 
  
 0.969
DM82_3175
Type II secretion system (T2SS), N family protein.
 
   
 0.955
gspH
typeII_sec_gspH: type II secretion system protein H.
 
  
 0.922
gspI
gspI: type II secretion system protein I.
 
  
 0.908
gspE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.868
DM82_3171
Putative general secretion pathway protein J.
     
 0.846
epsE_1
Type II/IV secretion system family protein.
  
 
 0.838
epsE_3
Type II/IV secretion system family protein.
  
 
 0.838
DM82_2329
Polysaccharide biosynthesis family protein.
  
     0.772
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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