close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspLtypeII_sec_gspL: type II secretion system protein L. (476 aa)    
Predicted Functional Partners:
epsM
Type II secretion system (T2SS), M family protein.
 
 
 0.995
DM82_3172
Type II secretion system (T2SS), K family protein.
 
  
 0.947
DM82_3175
Type II secretion system (T2SS), N family protein.
 
   
 0.942
gspH
typeII_sec_gspH: type II secretion system protein H.
 
  
 0.915
gspI
gspI: type II secretion system protein I.
 
  
 0.866
epsE_1
Type II/IV secretion system family protein.
  
 
 0.831
gspE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.831
epsE_3
Type II/IV secretion system family protein.
  
 
 0.831
DM82_3171
Putative general secretion pathway protein J.
     
 0.800
DM82_2329
Polysaccharide biosynthesis family protein.
  
     0.772
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.