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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkJAlcohol dehydrogenase acceptor. (556 aa)    
Predicted Functional Partners:
DM82_5294
WD domain, G-beta repeat family protein.
    
 0.659
fabG_5
Short chain dehydrogenase family protein.
       0.558
DM82_5142
Membrane bound FAD containing D-sorbitol dehydrogenase family protein.
   
   0.539
DM82_1577
Ankyrin repeat family protein.
    
 0.524
DM82_837
Caspase domain protein.
    
 0.524
moaF_1
Molybdenum cofactor biosynthesis F family protein.
  
    0.479
DM82_3210
Hypothetical protein.
       0.465
feaB_1
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
  
  
 0.412
DM82_1657
Tetratricopeptide repeat family protein.
    
 0.402
DM82_18
Hypothetical protein.
    
 0.402
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.