Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM82_3230Putative transmembrane regulator PrtR. (250 aa)    
Predicted Functional Partners:
DM82_3231
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 0.929
DM82_3232
Catalase family protein.
 
    0.756
DM82_3233
Prokaryotic cytochrome b561 family protein.
 
     0.697
sigC
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 0.635
DM82_4638
Alpha/beta hydrolase family protein.
  
     0.509
DM82_5540
Alpha/beta hydrolase family protein.
  
     0.509
rpoE_1
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
 
 0.487
DM82_4862
Secreted repeat of unknown function family protein.
 
     0.468
DM82_1258
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
 
 0.435
rpoE
rpoE_Sigma70: RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.435
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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