STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3233Prokaryotic cytochrome b561 family protein. (175 aa)    
Predicted Functional Partners:
DM82_3232
Catalase family protein.
 
     0.938
DM82_3230
Putative transmembrane regulator PrtR.
 
     0.697
DM82_3231
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
       0.530
yceI_2
yceI-like domain protein; Belongs to the UPF0312 family.
 
  
 0.518
yceI_1
yceI-like domain protein; Belongs to the UPF0312 family.
 
  
 0.412
cpo
Non-heme chloroperoxidase.
  
  
 0.409
mdcC
Malonate_delta: malonate decarboxylase acyl carrier protein.
  
     0.407
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.