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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3236parB-like nuclease domain protein. (300 aa)    
Predicted Functional Partners:
DM82_3234
Recombinase family protein.
 
    0.954
DM82_3235
parB_part: ParB/RepB/Spo0J family partition domain protein.
 
     0.953
minD_2
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
 
 0.617
gidB
16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.589
soj_1
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
  
 
 0.561
soj_2
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
  
 
 0.561
yhjQ
cellulose_yhjQ: cellulose synthase operon protein YhjQ.
  
 
 0.561
DM82_4865
Histidine phosphatase super family protein.
  
     0.553
DM82_2571
parB-like nuclease family protein.
  
     0.478
DM82_883
Hypothetical protein.
  
     0.469
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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