Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3273Hypothetical protein. (385 aa)    
Predicted Functional Partners:
DM82_4113
tadE-like family protein.
  
     0.682
DM82_330
Methyltransferase domain protein.
 
     0.642
DM82_6043
Tad-like Flp pilus-assembly family protein.
  
     0.637
DM82_332
Hypothetical protein.
 
     0.632
DM82_4114
Flp pilus-assembly TadE/G-like family protein.
  
     0.622
DM82_329
Major Facilitator Superfamily protein.
  
     0.607
DM82_1055
Tad-like Flp pilus-assembly family protein.
  
     0.600
DM82_3274
Hypothetical protein.
       0.588
DM82_3288
LTXXQ motif family protein.
  
     0.582
epaO
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
  
     0.574
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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