STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3296Patatin-like phospholipase family protein. (289 aa)    
Predicted Functional Partners:
DM82_1043
Putative transmembrane protein.
  
     0.709
gpmA_3
Histidine phosphatase super family protein.
  
     0.705
DM82_6268
Putative transmembrane protein.
 
   
 0.696
DM82_3295
Hypothetical protein.
       0.677
DM82_1777
AIG2-like family protein.
 
     0.667
DM82_4780
Gram-negative porin family protein.
  
     0.641
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
     0.635
DM82_2096
fecR family protein.
 
     0.614
DM82_1042
Putative transmembrane protein.
  
     0.602
ompW_4
ompW family protein.
  
     0.579
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.