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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3300Thioredoxin family protein. (123 aa)    
Predicted Functional Partners:
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.787
DM82_2263
Transglycosylase SLT domain protein.
  
     0.768
DM82_2199
Gram-negative porin family protein.
  
 
   0.758
DM82_617
Putative lipoprotein transmembrane.
  
  
 0.758
DM82_4288
Gram-negative porin family protein.
  
 
   0.756
DM82_5052
Gram-negative porin family protein.
  
 
   0.755
topB
topB: DNA topoisomerase III family protein.
 
   
 0.749
DM82_741
Gram-negative porin family protein.
  
 
   0.746
DM82_2704
Gram-negative porin family protein.
  
 
   0.740
DM82_4800
Gram-negative porin family protein.
  
 
   0.740
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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