Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kinBHAMP domain protein. (802 aa)    
Predicted Functional Partners:
phoP_1
Bacterial regulatory, Fis family protein.
 
 0.997
DM82_3308
Hypothetical protein.
 
     0.968
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
   
 0.898
DM82_1514
Putative membrane protein.
  
     0.702
evgS
Response regulator.
   
 
 0.682
cph2_1
GGDEF: diguanylate cyclase domain protein.
  
 
 0.672
DM82_1014
nlpB/DapX lipofamily protein.
  
     0.647
DM82_741
Gram-negative porin family protein.
 
     0.625
DM82_1861
nlpB/DapX lipofamily protein.
  
     0.618
zraS_3
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 
 0.612
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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