STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3330Phage late control D family protein. (366 aa)    
Predicted Functional Partners:
DM82_3336
Phage tail sheath family protein.
 
 
 0.995
DM82_3331
Phage P2 GpU family protein.
 
  
 0.993
DM82_3341
25-like lysozyme family protein.
 
 
 0.990
DM82_3057
25-like lysozyme family protein.
 
 
 0.986
DM82_3335
Tail_tube: phage major tail tube protein.
 
  
 0.980
DM82_3339
tail_P2_I: phage tail protein I.
 
  
 0.978
DM82_3340
Baseplate J-like family protein.
 
  
 0.968
DM82_3332
Putative membrane protein.
 
  
 0.961
DM82_3342
phage_P2_V: phage baseplate assembly V family protein.
 
  
 0.961
DM82_3058
Putative baseplate assembly protein J GpJ.
 
  
 0.957
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.