STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3351Putative membrane protein. (114 aa)    
Predicted Functional Partners:
DM82_3350
Hypothetical protein.
  
    0.881
DM82_3348
phage_LysB: phage lysis regulatory, LysB family protein.
       0.798
DM82_3349
Putative peptidoglycan binding domain protein.
       0.784
DM82_3352
Phage Tail Protein X family protein.
  
    0.778
DM82_3354
Phage head completion family protein.
       0.769
DM82_3353
Putative gp37.
       0.746
DM82_3355
Phage small terminase subunit.
       0.568
DM82_3356
major_capsid_P2: phage major capsid protein, P2 family.
       0.568
DM82_3346
tail_comp_S: phage virion morphogenesis protein.
       0.565
DM82_3347
P2 phage tail completion R family protein.
       0.565
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.