close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_3360Hypothetical protein. (223 aa)    
Predicted Functional Partners:
DM82_3361
DNA recombination-mediator A family protein.
  
 
 0.908
DM82_308
Radc: DNA repair RadC family protein; Belongs to the UPF0758 family.
  
    0.822
cph2_1
GGDEF: diguanylate cyclase domain protein.
  
  
 0.767
DM82_1878
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.719
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
  
    0.635
DM82_5440
Flavin containing amine oxidoreductase family protein.
  
    0.618
dprA
dprA: DNA protecting protein DprA.
  
 
 0.612
cph2_2
GGDEF: diguanylate cyclase domain protein.
  
  
 0.585
cph2_7
GGDEF: diguanylate cyclase domain protein.
  
  
 0.585
DM82_5804
Hypothetical protein.
  
  
 0.572
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.